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f : freesurfer@nmr.mgh.harvard.edu 25 October 2011 • 10:51PM -0400

[Freesurfer] mris_pmake error
by Steph Bickel

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Hi,

when trying to use mris_pmake I get error messages:
when I run:mris_pmake
I get:
sh: cannot create lock: Permission denied

mris_pmake
I'm sorry, but an error condition has occurred.
While I was checking on the options file,
I couldn't access the options file. Does it exist?

Exiting to system with code 40


When I run: sudo ./bin/mris_pmake
I get:
mris_pmake
I'm sorry, but an error condition has occurred.
While I was processing environment,
it seems that the SUBJECTS_DIR env variable is not set.

Exiting to system with code 10


I did specify SUBJECTS_DIR in SetUpFreesurfer.sh that I source in the bashrc
file and the variable is set for the other freesurfer functions.

I am using   freesurfer-Linux-centos4_x86_64-stable-pub-v5.1.0 on ubuntu
11.04.

Any help is much appreciated.

thanks,

Stephan

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